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1.
Science ; 373(6554): 535-541, 2021 07 30.
Artigo em Inglês | MEDLINE | ID: mdl-34326235

RESUMO

Interkingdom competition occurs between hymenopteran parasitoids and insect viruses sharing the same insect hosts. It has been assumed that parasitoid larvae die with the death of the infected host or as result of competition for host resources. Here we describe a gene family, parasitoid killing factor (pkf), that encodes proteins toxic to parasitoids of the Microgastrinae group and determines parasitism success. Pkfs are found in several entomopathogenic DNA virus families and in some lepidopteran genomes. We provide evidence of equivalent and specific toxicity against endoparasites for PKFs found in entomopoxvirus, ascovirus, baculovirus, and Lepidoptera through a mechanism that elicits apoptosis in the cells of susceptible parasitoids. This highlights the evolutionary arms race between parasitoids, viruses, and their insect hosts.


Assuntos
Entomopoxvirinae/fisiologia , Proteínas de Insetos/toxicidade , Lepidópteros/parasitologia , Lepidópteros/virologia , Proteínas Virais/toxicidade , Vespas/fisiologia , Animais , Apoptose , Evolução Biológica , Transferência Genética Horizontal , Genoma de Inseto , Interações Hospedeiro-Parasita , Proteínas de Insetos/química , Proteínas de Insetos/genética , Proteínas de Insetos/metabolismo , Vírus de Insetos/fisiologia , Larva/genética , Larva/parasitologia , Larva/virologia , Lepidópteros/genética , Lepidópteros/metabolismo , Nucleopoliedrovírus/fisiologia , Spodoptera/genética , Spodoptera/metabolismo , Spodoptera/parasitologia , Spodoptera/virologia , Proteínas Virais/química , Proteínas Virais/genética , Proteínas Virais/metabolismo , Vespas/crescimento & desenvolvimento
2.
Viruses ; 12(5)2020 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-32429141

RESUMO

The lytic phage, fHe-Kpn01 was isolated from sewage water using an extended-spectrum beta-lactamase-producing strain of Klebsiella pneumoniae as a host. The genome is 43,329 bp in size and contains direct terminal repeats of 222 bp. The genome contains 56 predicted genes, of which proteomics analysis detected 29 different proteins in purified phage particles. Comparison of fHe-Kpn01 to other phages, both morphologically and genetically, indicated that the phage belongs to the family Podoviridae and genus Drulisvirus. Because fHe-Kpn01 is strictly lytic and does not carry any known resistance or virulence genes, it is suitable for phage therapy. It has, however, a narrow host range since it infected only three of the 72 tested K. pneumoniae strains, two of which were of capsule type KL62. After annotation of the predicted genes based on the similarity to genes of known function and proteomics results on the virion-associated proteins, 22 gene products remained annotated as hypothetical proteins of unknown function (HPUF). These fHe-Kpn01 HPUFs were screened for their toxicity in Escherichia coli. Three of the HPUFs, encoded by the genes g10, g22, and g38, were confirmed to be toxic.


Assuntos
Bacteriófagos/metabolismo , Klebsiella pneumoniae/virologia , Podoviridae/metabolismo , Proteínas Virais/toxicidade , Sequência de Aminoácidos , Antibacterianos/química , Cápsulas Bacterianas/genética , Bacteriófagos/classificação , Bacteriófagos/isolamento & purificação , Bacteriófagos/fisiologia , Escherichia coli/genética , Escherichia coli/crescimento & desenvolvimento , Genoma Viral/genética , Especificidade de Hospedeiro , Klebsiella pneumoniae/efeitos dos fármacos , Klebsiella pneumoniae/genética , Filogenia , Podoviridae/classificação , Podoviridae/isolamento & purificação , Podoviridae/fisiologia , Esgotos/virologia , Proteínas Virais/química , Proteínas Virais/genética , Vírion/ultraestrutura , Resistência beta-Lactâmica
3.
Mol Plant Microbe Interact ; 31(10): 1006-1020, 2018 10.
Artigo em Inglês | MEDLINE | ID: mdl-29649964

RESUMO

In this study, we used high-throughput deep nucleotide sequencing to characterize the global transcriptional response of Nicotiana benthamiana plants to transient expression of the RepA protein from Oat dwarf virus (ODV). We identified 7,878 significantly differentially expressed genes (DEG) that mapped to 125 pathways, suggesting that comprehensive networks are involved in regulation of RepA-induced cell death. Of the 202 DEG associated with photosynthesis, expression of 195 was found to be downregulated, indicating a significant inhibition of photosynthesis in response to RepA expression, which is associated with chloroplast disruption and physiological changes. We focused our analysis on NbFDN1, a member of the ferredoxin protein family that participates in the chloroplast electron transport chain performing oxygenic photosynthesis, which was identified to directly interact with NbTsip1. We separately knocked down the expression of NbFDN1 and NbTsip1 using virus-induced gene silencing, and found that NbFDN1 silencing speeded up the development of RepA-induced cell death, unlike NbTsip1 silencing, which showed an opposite effect on RepA-induced response. Further study showed increased H2O2 accumulation and a negative correlation between the transcripts of NbFDN1 and NbTsip1 in NbFDN1-silenced plants. Hence, we speculate that NbFDN1 has an effect on RepA-induced hypersensitive response-like response by modulating NbTsip1 transcription as well as H2O2 production.


Assuntos
Regulação da Expressão Gênica de Plantas/imunologia , Doenças das Plantas/virologia , Proteínas de Plantas/metabolismo , Transcriptoma , Proteínas Virais/metabolismo , Morte Celular , Cloroplastos/ultraestrutura , Complexo de Proteínas da Cadeia de Transporte de Elétrons/genética , Complexo de Proteínas da Cadeia de Transporte de Elétrons/metabolismo , Inativação Gênica , Filogenia , Doenças das Plantas/imunologia , Proteínas de Plantas/genética , RNA de Plantas/genética , RNA de Plantas/metabolismo , Proteínas Virais/toxicidade
4.
Viruses ; 8(6)2016 06 22.
Artigo em Inglês | MEDLINE | ID: mdl-27338450

RESUMO

The bacteriophage lambda replication initiation protein P exhibits a toxic effect on its Escherichia coli (E. coli) host, likely due to the formation of a dead-end P-DnaB complex, sequestering the replicative DnaB helicase from further activity. Intracellular expression of P triggers SOS-independent cellular filamentation and rapidly cures resident ColE1 plasmids. The toxicity of P is suppressed by alleles of P or dnaB. We asked whether P buildup within a cell can influence E. coli replication fidelity. The influence of P expression from a defective prophage, or when cloned and expressed from a plasmid was examined by screening for auxotrophic mutants, or by selection for rifampicin resistant (Rif(R)) cells acquiring mutations within the rpoB gene encoding the ß-subunit of RNA polymerase (RNAP), nine of which proved unique. Using fluctuation assays, we show that the intracellular expression of P evokes a mutator effect. Most of the Rif(R) mutants remained P(S) and localized to the Rif binding pocket in RNAP, but a subset acquired a P(R) phenotype, lost sensitivity to ColE1 plasmid curing, and localized outside of the pocket. One P(R) mutation was identical to rpo*Q148P, which alleviates the UV-sensitivity of ruv strains defective in the migration and resolution of Holliday junctions and destabilizes stalled RNAP elongation complexes. The results suggest that P-DnaB sequestration is mutagenic and supports an earlier observation that P can interact with RNAP.


Assuntos
Bacteriófago lambda/crescimento & desenvolvimento , RNA Polimerases Dirigidas por DNA/metabolismo , DnaB Helicases/metabolismo , Proteínas de Escherichia coli/metabolismo , Escherichia coli/virologia , Interações Hospedeiro-Parasita , Mutação , Proteínas Virais/toxicidade , Antibacterianos/farmacologia , RNA Polimerases Dirigidas por DNA/genética , Farmacorresistência Bacteriana , Proteínas de Escherichia coli/genética , Ligação Proteica , Rifampina/farmacologia
5.
J Biol Chem ; 291(2): 739-51, 2016 Jan 08.
Artigo em Inglês | MEDLINE | ID: mdl-26601953

RESUMO

PB1-F2 is a small accessory protein encoded by an alternative open reading frame in PB1 segments of most influenza A virus. PB1-F2 is involved in virulence by inducing mitochondria-mediated immune cells apoptosis, increasing inflammation, and enhancing predisposition to secondary bacterial infections. Using biophysical approaches we characterized membrane disruptive activity of the full-length PB1-F2 (90 amino acids), its N-terminal domain (52 amino acids), expressed by currently circulating H1N1 viruses, and its C-terminal domain (38 amino acids). Both full-length and N-terminal domain of PB1-F2 are soluble at pH values ≤6, whereas the C-terminal fragment was found soluble only at pH ≤ 3. All three peptides are intrinsically disordered. At pH ≥ 7, the C-terminal part of PB1-F2 spontaneously switches to amyloid oligomers, whereas full-length and the N-terminal domain of PB1-F2 aggregate to amorphous structures. When incubated with anionic liposomes at pH 5, full-length and the C-terminal part of PB1-F2 assemble into amyloid structures and disrupt membrane at nanomolar concentrations. PB1-F2 and its C-terminal exhibit no significant antimicrobial activity. When added in the culture medium of mammalian cells, PB1-F2 amorphous aggregates show no cytotoxicity, whereas PB1-F2 pre-assembled into amyloid oligomers or fragmented nanoscaled fibrils was highly cytotoxic. Furthermore, the formation of PB1-F2 amyloid oligomers in infected cells was directly reflected by membrane disruption and cell death as observed in U937 and A549 cells. Altogether our results demonstrate that membrane-lytic activity of PB1-F2 is closely linked to supramolecular organization of the protein.


Assuntos
Amiloide/toxicidade , Lipossomos/metabolismo , Proteínas Virais/toxicidade , Anti-Infecciosos/farmacologia , Bacillus subtilis/efeitos dos fármacos , Morte Celular/efeitos dos fármacos , Linhagem Celular Tumoral , Escherichia coli/efeitos dos fármacos , Humanos , Concentração de Íons de Hidrogênio , Vírus da Influenza A/patogenicidade , Vírus da Influenza A/ultraestrutura , Lipossomos/ultraestrutura , Testes de Sensibilidade Microbiana , Permeabilidade , Agregados Proteicos/efeitos dos fármacos , Multimerização Proteica/efeitos dos fármacos , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Proteínas Virais/química
6.
J Virol ; 88(11): 6318-28, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24672025

RESUMO

UNLABELLED: The adenovirus E4orf4 protein induces nonclassical apoptosis in mammalian cells through at least two complementing pathways regulated by the interactions of E4orf4 with protein phosphatase 2A (PP2A) and Src kinases. In Saccharomyces cerevisiae cells, which do not express Src, E4orf4 induces PP2A-dependent toxicity. The yeast Golgi apyrase Ynd1 was found to contribute to E4orf4-mediated toxicity and to interact with the PP2A-B55α regulatory subunit. In addition, a mammalian Ynd1 orthologue, the NTPDASE4 gene product Golgi UDPase, was shown to physically interact with E4orf4. Here we report that knockdown of NTPDASE4 suppressed E4orf4-induced cell death. Conversely, overexpression of the NTPDASE4 gene products Golgi UDPase and LALP70 enhanced E4orf4-induced cell killing. We found that similarly to results obtained in yeast, the apyrase activity of mammalian UDPase was not required for its contribution to E4orf4-induced toxicity. The interaction between E4orf4 and UDPase had two consequences: a PP2A-dependent one, resulting in increased UDPase levels, and a PP2A-independent outcome that led to dissociation of large UDPase-containing protein complexes. The present report extends our findings in yeast to E4orf4-mediated death of mammalian cells, and combined with previous results, it suggests that the E4orf4-NTPDase4 pathway, partly in association with PP2A, may provide an alternative mechanism for the E4orf4-Src pathway to contribute to the cytoplasmic death function of E4orf4. IMPORTANCE: The adenovirus E4orf4 protein contributes to regulation of the progression of virus infection from the early to the late phase, and when expressed alone, it induces a unique caspase-independent programmed cell death which is more efficient in cancer cells than in normal cells. The interactions of E4orf4 with cellular proteins that mediate its functions, such as PP2A and Src kinases, are highly conserved in evolution. The results presented here reveal that the NTPDASE4 gene product Golgi UDPase, first discovered to contribute to E4orf4 toxicity in Saccharomyces cerevisiae, associates with E4orf4 and plays a role in induction of cell death in mammalian cells. Details of the functional interaction between E4orf4, PP2A, and the UDPase are described. Identification of the evolutionarily conserved mechanisms underlying E4orf4 activity will increase our understanding of the interactions between the virus and the host cell and will contribute to our grasp of the unique mode of E4orf4-induced cell death.


Assuntos
Apoptose/genética , Apirase/metabolismo , Nucleosídeo-Trifosfatase/metabolismo , Proteína Fosfatase 2/metabolismo , Pirofosfatases/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Proteínas Virais/metabolismo , Apoptose/fisiologia , Western Blotting , Cromatografia em Gel , Primers do DNA/genética , Técnicas de Silenciamento de Genes , Glutationa Transferase , Complexo de Golgi/metabolismo , Células HEK293 , Humanos , Processamento de Imagem Assistida por Computador , Imunoprecipitação , Plasmídeos/genética , Pirofosfatases/genética , Saccharomyces cerevisiae , Proteínas Virais/toxicidade
7.
Bing Du Xue Bao ; 28(3): 258-64, 2012 May.
Artigo em Chinês | MEDLINE | ID: mdl-22764529

RESUMO

ENHANCIN is an enhancing protein chiefly found in insect baculoviruses. One ENHANCIN homologue was identified, by blast method, in Agrotis Segetum granulovirus (AgseGV) genome, named enhancin-like. Sequence analysis indicated that this gene includes the conserved domains, conserved in other ENHANCIN, and it has no signal peptide or a-transmembrane helix. A proline-rich domain, which is similar to those of mammals, is present at its C-terminal. To analyze the synergistic function of AgseGV enhancin-like gene, prokaryotic expression vectors of its whole gene and the 5'-truncated fragment (1, 017bp) were constructed. Expression product of truncated fragment was purified by chromatography, and then it was used to prepare antibody. The expression product of whole gene was identified by Western blot with specific antibody and anti-His-Tag antibody. Bioassay proved that the expression product of whole gene can increase the mortality with 16.25% to 3th instar larvae of Helicoverpa armigera (HaNPV: 1.17 x 10(2) PIBS/mL), while the truncated fragment has no obvious synergistic function.


Assuntos
Baculoviridae/metabolismo , Expressão Gênica , Proteínas Virais/genética , Proteínas Virais/metabolismo , Sequência de Aminoácidos , Animais , Baculoviridae/genética , Controle de Insetos , Larva/efeitos dos fármacos , Larva/crescimento & desenvolvimento , Dados de Sequência Molecular , Mariposas/efeitos dos fármacos , Mariposas/crescimento & desenvolvimento , Controle Biológico de Vetores , Proteínas Virais/isolamento & purificação , Proteínas Virais/toxicidade
8.
J Cell Physiol ; 227(4): 1446-54, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-21618535

RESUMO

Hepatitis B virus (HBV) X protein (HBx) has been implicated in HBV-associated carcinogenesis through activation of IκB kinase (IKK)/nuclear factor kappa B (NF-κB) signaling pathway. Besides activating NF-κB in the cytoplasm, IKKα was found in the nucleus to regulate gene expression epigenetically in response to various stimuli. However, it is unknown whether nuclear IKKα plays a role in HBx-associated tumor progression. Moreover, the molecular mechanism underlying IKKα nuclear transport also remains to be elucidated. Here, we disclosed HBx as a new inducer of IKKα nuclear transport in hepatoma cells. HBx induced IKKα nuclear transport in an Akt-dependent manner. HBx-activated Akt promoted IKKα nuclear translocation via phosphorylating its threonine-23 (Thr23). In addition, IKKα ubiquitination enhanced by HBx and Akt also contributed to the IKKα accumulation in the nucleus, indicating the involvement of ubiquitination in Akt-increased IKKα nuclear transport in response to HBx. Furthermore, inhibition of IKKα nuclear translocation by mutation of its nuclear localization signal and Thr23 diminished IKKα-dependent cell migration. Taken together, our findings shed light on the molecular mechanism of IKKα nuclear translocation and provide a potential role of nuclear IKKα in HBx-mediated hepatocellular carcinoma (HCC) progression.


Assuntos
Carcinoma Hepatocelular/etiologia , Vírus da Hepatite B/patogenicidade , Quinase I-kappa B/metabolismo , Neoplasias Hepáticas/etiologia , Proteínas Proto-Oncogênicas c-akt/metabolismo , Transativadores/toxicidade , Proteínas Virais/toxicidade , Transporte Ativo do Núcleo Celular/efeitos dos fármacos , Carcinoma Hepatocelular/patologia , Carcinoma Hepatocelular/fisiopatologia , Linhagem Celular Tumoral , Movimento Celular/efeitos dos fármacos , Movimento Celular/genética , Movimento Celular/fisiologia , Progressão da Doença , Células HEK293 , Células Hep G2 , Humanos , Quinase I-kappa B/genética , Neoplasias Hepáticas/patologia , Neoplasias Hepáticas/fisiopatologia , Mutagênese Sítio-Dirigida , Invasividade Neoplásica/patologia , Invasividade Neoplásica/fisiopatologia , Sinais de Localização Nuclear/genética , Fosforilação , Ubiquitinação , Proteínas Virais Reguladoras e Acessórias
9.
Bioeng Bugs ; 2(3): 163-7, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21747234

RESUMO

The limited ability of conventional therapies to achieve the long-term survival of metastatic lung and colon cancer patients suggests the need for new treatment options. In this respect, genes encoding cytotoxic proteins have been proposed as a new strategy to enhance the activity of drugs, and combined therapies involving such genes and classical antitumoral drugs have been studied intensively. The E gene from phiX174 encodes a membrane protein with a toxic domain that leads to a decrease in tumour cell growth rates. Therefore, in order to improve the anti-tumour effects of currently used chemotherapeutic drugs on cancer cells, we investigated the association of the E suicide gene with these antineoplastic drugs. The E gene has antitumoral effects in both lung and colon cancer cells. In addition, expression of this gene induces ultrastructural changes in lung cancer transfected cells (A-549), although the significance of these changes remains unknown. The effect of combined therapy (gene and cytotoxic therapy) enhances the inhibition of tumour cell proliferation in comparison to single treatments. Indeed, our in vitro results indicate that an experimental therapeutic strategy based on this combination of E gene therapy and cytotoxic drugs may result in a new treatment strategy for patients with advanced lung and colon cancer.


Assuntos
Antineoplásicos/farmacologia , Apoptose , Bacteriófagos/genética , Neoplasias do Colo/terapia , Neoplasias Pulmonares/terapia , Proteínas Virais/toxicidade , Apoptose/efeitos dos fármacos , Bacteriófagos/metabolismo , Terapia Biológica , Linhagem Celular Tumoral , Neoplasias do Colo/tratamento farmacológico , Neoplasias do Colo/genética , Neoplasias do Colo/fisiopatologia , Terapia Combinada , Vetores Genéticos/genética , Vetores Genéticos/metabolismo , Humanos , Neoplasias Pulmonares/tratamento farmacológico , Neoplasias Pulmonares/genética , Neoplasias Pulmonares/fisiopatologia , Proteínas Virais/genética , Proteínas Virais/metabolismo
10.
Infect Immun ; 79(8): 3262-72, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21646456

RESUMO

Cytolethal distending toxin (Cdt) is produced by a variety of pathogenic bacteria, including pathogenic serotypes of Shiga toxin-producing Escherichia coli (STEC). The Cdt family comprises five variants (Cdt-I to Cdt-V) encoded by three genes located within the chromosome or plasmids or, in the case of Cdt-I, within bacteriophages. In this study, we evaluated the occurrence of the cdt gene in a collection of 140 environmental STEC isolates. cdt was detected in 12.1% of strains, of which five strains carried inducible bacteriophages containing the Cdt-V variant. Two Cdt-V phages of the Siphoviridae morphology lysogenized Shigella sonnei, generating two lysogens: a single Cdt phage lysogen and a double lysogen, containing a Cdt phage and an Stx phage, both from the wild-type strain. The rates of induction of Cdt phages were evaluated by quantitative PCR, and spontaneous induction of Cdt-V phage was observed, whereas induction of Stx phage in the double lysogen was mitomycin C dependent. The Cdt distending effect was observed in HeLa cells inoculated with the supernatant of the Cdt-V phage lysogen. A ClaI fragment containing the cdt-V gene of one phage was cloned, and sequencing confirmed the presence of Cdt-V, as well as a fragment downstream from the cdt homolog to gpA, encoding a replication protein of bacteriophage P2. Evaluation of Cdt-V phages in nonclinical water samples showed densities of 10(2) to 10(9) gene copies in 100 ml, suggesting the high prevalence of Cdt phages in nonclinical environments.


Assuntos
Toxinas Bacterianas/biossíntese , Colífagos/genética , Colífagos/isolamento & purificação , Escherichia coli Shiga Toxigênica/virologia , Proteínas Virais/biossíntese , Toxinas Bacterianas/genética , Toxinas Bacterianas/toxicidade , Colífagos/ultraestrutura , DNA Viral/química , DNA Viral/genética , Células HeLa , Humanos , Lisogenia , Mitomicina/metabolismo , Dados de Sequência Molecular , Prófagos/efeitos dos fármacos , Análise de Sequência de DNA , Shigella sonnei/virologia , Siphoviridae/genética , Siphoviridae/isolamento & purificação , Siphoviridae/ultraestrutura , Proteínas Virais/genética , Proteínas Virais/toxicidade , Ativação Viral
11.
J Virol ; 84(21): 11440-7, 2010 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-20810737

RESUMO

Porcine circovirus type 2 (PCV2) infection is associated with significant and serious swine diseases worldwide, while PCV1 appears to be a nonpathogenic virus. Previous studies demonstrated that the ORF3 protein of PCV2 (PCV2ORF3) was involved in PCV2 pathogenesis via its proapoptotic capability (J. Liu, I. Chen, Q. Du, H. Chua, and J. Kwang, J. Virol. 80:5065-5073, 2006). If PCV2ORF3-induced apoptosis is a determinant of virulence, PCV1ORF3 is hypothesized to lack this ability. The properties of PCV1 and PCV2 ORF3, expressed as fusion proteins to an enhanced green fluorescent protein (eGFP), were characterized with regard to their ability to cause cellular morphological changes, detachment, death, and apoptosis. PCV1ORF3 significantly induced more apoptotic cell death and was toxic to more different cell types than PCV2ORF3 was. PCV1ORF3-associated cell death was caspase dependent. PCV1ORF3 also induced poly(ADP-ribose) polymerase 1 (PARP) cleavage; however, whether PARP was involved in cell death requires further studies. Truncation of PCV1 and elongation of PCV2 ORF3 proteins revealed that the first 104 amino acids contain a domain capable of inducing cell death, whereas the C terminus of PCV1ORF3 contains a domain possibly responsible for enhancing cell death. These results suggest that the pathogenicity of PCV2 for pigs is either not determined or not solely determined by the ORF3 protein.


Assuntos
Infecções por Circoviridae/virologia , Circovirus/patogenicidade , Proteínas Virais/toxicidade , Animais , Apoptose , Linhagem Celular , Forma Celular , Infecções por Circoviridae/patologia , Circovirus/química , Humanos , Suínos , Doenças dos Suínos/virologia
12.
Bioinformatics ; 26(18): i482-8, 2010 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-20823311

RESUMO

MOTIVATION: Animal toxins operate by binding to receptors and ion channels. These proteins are short and vary in sequence, structure and function. Sporadic discoveries have also revealed endogenous toxin-like proteins in non-venomous organisms. Viral proteins are the largest group of quickly evolving proteomes. We tested the hypothesis that toxin-like proteins exist in viruses and that they act to modulate functions of their hosts. RESULTS: We updated and improved a classifier for compact proteins resembling short animal toxins that is based on a machine-learning method. We applied it in a large-scale setting to identify toxin-like proteins among short viral proteins. Among the approximately 26 000 representatives of such short proteins, 510 sequences were positively identified. We focused on the 19 highest scoring proteins. Among them, we identified conotoxin-like proteins, growth factors receptor-like proteins and anti-bacterial peptides. Our predictor was shown to enhance annotation inference for many 'uncharacterized' proteins. We conclude that our protocol can expose toxin-like proteins in unexplored niches including metagenomics data and enhance the systematic discovery of novel cell modulators for drug development. AVAILABILITY: ClanTox is available at http://www.clantox.cs.huji.ac.il.


Assuntos
Proteínas Virais/fisiologia , Proteínas Virais/toxicidade , Algoritmos , Sequência de Aminoácidos , Animais , Inteligência Artificial , Sequência de Bases , Conotoxinas/química , Metagenômica , Dados de Sequência Molecular , Dobramento de Proteína , Estrutura Terciária de Proteína , Proteoma , Toxinas Biológicas/fisiologia , Toxinas Biológicas/toxicidade , Proteínas Virais/química
13.
J Gen Virol ; 91(Pt 8): 2007-2018, 2010 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-20392902

RESUMO

Intestinal epithelial cell death following rotavirus infection is associated with villus atrophy and gastroenteritis. Roles for both apoptosis and necrosis in cytocidal activity within rotavirus-infected epithelial cells have been proposed. Additionally, inactivated rotavirus has been reported to induce diarrhoea in infant mice. We further examined the death mechanisms induced in epithelial cell lines following rotavirus infection or inactivated rotavirus exposure. Monolayer integrity changes in MA104, HT-29 and partially differentiated Caco-2 cells following inactivated rotavirus exposure or RRV or CRW-8 rotavirus infection paralleled cell metabolic activity and viability reductions. MA104 cell exposure to rotavirus dsRNA also altered monolayer integrity. Inactivated rotaviruses induced delayed cell function losses that were unrelated to apoptosis. Phosphatidylserine externalization, indicating early apoptosis, occurred in MA104 and HT-29 but not in partially differentiated Caco-2 cells by 11 h after infection. Rotavirus activation of phosphatidylinositol 3-kinase partially protected MA104 and HT-29 cells from early apoptosis. In contrast, activation of the stress-activated protein kinase JNK by rotavirus did not influence apoptosis induction in these cells. RRV infection produced DNA fragmentation, indicating late-stage apoptosis, in fully differentiated Caco-2 cells only. These studies show that the apoptosis initiation and cell death mechanism induced by rotavirus infection depend on cell type and degree of differentiation. Early stage apoptosis resulting from rotavirus infection is probably counter-balanced by virus-induced phosphatidylinositol 3-kinase activation. The ability of inactivated rotaviruses and rotavirus dsRNA to perturb monolayer integrity supports a potential role for these rotavirus components in disease pathogenesis.


Assuntos
Morte Celular , Células Epiteliais/virologia , RNA Viral/genética , Rotavirus/patogenicidade , Proteínas Virais/toxicidade , Animais , Linhagem Celular , Sobrevivência Celular , Humanos , Macaca mulatta , Transfecção
14.
Arch Virol ; 154(6): 919-28, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-19440830

RESUMO

Cumulative studies have demonstrated that dengue virus infection results in the induction of apoptosis of certain cells in vitro. Moreover, apoptosis of microvascular endothelial cells in the brain and in the intestinal serosa has been demonstrated postmortem in dengue virus (DENV)-infected patients. In this work, human microvascular endothelial cells (HMEC-1) infected with a DENV-2 clinical isolate, or HMEC-1 cells transfected with its protease sequence (NS3pro) or its complex (NS2BNS3pro) were able to trigger apoptosis after 24 h of infection or transfection. The infected or transfected HMEC-1 cells displayed the distinctive apoptotic hallmarks, which include cytoplasmic shrinkage and plasma membrane blebbing. In addition, the transfected HMEC-1 cells showed biochemical changes such as exposure of phosphatidylserine on the outer leaflet of the plasma membrane, TUNEL positivity, caspase 3 activation and cleaved PARP, a central regulator of apoptosis. These findings suggest the role of such proteins from the clinical isolate in the induction of apoptosis.


Assuntos
Apoptose , Vírus da Dengue/patogenicidade , Proteínas Virais/toxicidade , Caspase 3/metabolismo , Linhagem Celular , Membrana Celular/química , Membrana Celular/ultraestrutura , Colágeno Tipo XI/metabolismo , Células Endoteliais/virologia , Humanos , Marcação In Situ das Extremidades Cortadas , Fosfatidilserinas/análise , Transdução Genética , Transfecção
15.
Appl Environ Microbiol ; 75(8): 2484-94, 2009 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19270128

RESUMO

Lactococcus lactis phage mutants that are insensitive to the recently characterized abortive infection mechanism AbiV were isolated and analyzed in an effort to elucidate factors involved in the sensitivity to AbiV. Whole-genome sequencing of the phage mutants p2.1 and p2.2 revealed mutations in an orf that is transcribed early, indicating that this orf was responsible for AbiV sensitivity. Sequencing of the homologous regions in the genomes of other AbiV-insensitive mutants derived from p2 and six other lactococcal wild-type phages revealed point mutations in the homologous orf sequences. The orf was named sav (for sensitivity to AbiV), and the encoded polypeptide was named SaV. The purification of a His-tagged SaV polypeptide by gel filtration suggested that the polypeptide formed a dimer in its native form. The overexpression of SaV in L. lactis and Escherichia coli led to a rapid toxic effect. Conserved, evolutionarily related regions in SaV polypeptides of different phage groups are likely to be responsible for the AbiV-sensitive phenotype and the toxicity.


Assuntos
Bacteriófagos/genética , Bacteriófagos/isolamento & purificação , Genes Virais , Lactococcus lactis/virologia , Mutação de Sentido Incorreto , Cromatografia em Gel , Clonagem Molecular , DNA Viral/química , DNA Viral/genética , Dimerização , Escherichia coli/genética , Genoma Viral , Dados de Sequência Molecular , Análise de Sequência de DNA , Proteínas Virais/genética , Proteínas Virais/isolamento & purificação , Proteínas Virais/toxicidade
16.
Microbiology (Reading) ; 154(Pt 8): 2304-2314, 2008 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-18667563

RESUMO

Mycobacteriophage L5 is a temperate phage with a broad host range among the fast- and slow-growing mycobacteria such as Mycobacterium smegmatis, Mycobacterium tuberculosis, Mycobacterium avium and Mycobacterium ulcerans. L5 switches off host protein synthesis during the early stage of lytic growth, as was previously shown by protein expression profiling. Also, lethal genetic elements have been identified in L5 based on the fact that transformants could not be obtained with these genes. Using an inducible mycobacterial shuttle vector, we have identified three ORFs within an early operon of mycobacteriophage L5 which encode gene products (gp) toxic to the host M. smegmatis when expressed. These ORFs, coding for gp77, gp78 and gp79, presumably function as shut-off genes during early stages of phage replication. There is evidence that cell division is affected by one of the proteins (gp79). The transcription of the cytotoxic polypeptides is directed by a promoter situated in ORF83 and transcription control is achieved through the phage repressor gp71, which is shown by co-expression of this protein. The findings presented here should provide useful tools for the molecular genetics of mycobacteria. Further analysis of these and other mycobacteriophage-derived toxic polypeptides, together with the identification of their cellular targets, might provide a tool for the rapid identification of promising drug targets in emerging and re-emerging mycobacterial pathogens.


Assuntos
Regulação Viral da Expressão Gênica , Micobacteriófagos/metabolismo , Mycobacterium smegmatis/crescimento & desenvolvimento , Mycobacterium smegmatis/virologia , Proteínas Virais/toxicidade , Expressão Gênica , Micobacteriófagos/genética , Mycobacterium smegmatis/citologia , Fases de Leitura Aberta , Regiões Promotoras Genéticas , Proteínas Repressoras/genética , Proteínas Repressoras/metabolismo , Transcrição Gênica , Proteínas Virais/genética , Proteínas Virais/metabolismo
17.
J Mol Biol ; 380(5): 812-9, 2008 Jul 25.
Artigo em Inglês | MEDLINE | ID: mdl-18571198

RESUMO

The Nun protein of coliphage HK022 excludes superinfecting lambda phage. Nun recognizes and binds to the N utilization (nut) sites on phage lambda nascent RNA and induces transcription termination. Overexpression of Nun from a high-copy plasmid is toxic for Escherichia coli, despite the fact that nut sites are not encoded in the E. coli genome. Cells expressing Nun cannot exit stationary phase. Toxicity is related to transcription termination, since host and nun mutations that block termination also suppress cell killing. Nun inhibits expression of wild-type lacZ, but not lacZ expressed from the Crp/cAMP-independent lacUV5 promoter. Microarray and proteomic analyses show that Nun down-regulates crp and tnaA. Crp overexpression and high indole concentrations partially reverse Nun-mediated toxicity and restore lacZ expression.


Assuntos
Bacteriófago HK022/metabolismo , Escherichia coli/genética , Fatores de Transcrição/metabolismo , Fatores de Transcrição/toxicidade , Proteínas Virais/metabolismo , Proteínas Virais/toxicidade , Bacteriófago HK022/genética , Regulação para Baixo , Escherichia coli/crescimento & desenvolvimento , Indóis/análise , Indóis/metabolismo , Óperon Lac/genética , Mutação , Regiões Promotoras Genéticas , Regiões Terminadoras Genéticas , Fatores de Transcrição/genética , Transcrição Gênica , Proteínas Virais/genética
18.
Virology ; 377(1): 124-32, 2008 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-18502465

RESUMO

The E3L protein of vaccinia virus (VV) is well known for its capacity to evade cellular innate antiviral immunity related to interferon (IFN), for example PKR and RNaseL mediated antiviral activities. However, due to the limited range of cells that support VV E3L deletion mutant replication, the full capacity of E3L inhibiting the innate immune response induced by IFNs remains to be examined. In this report, the inhibition activity of VV E3L against a wide spectrum of human IFNs, including type I IFNs (12 IFN-alpha subtypes, IFN-beta, and IFN-omega), and type II IFN (gamma), was comparatively examined using the Copenhagen strain E3L deletion mutant and its revertant control virus in a human hepatoma cell line, Huh7. Deletion of the E3L open reading frame rendered the mutant VV sensitive to all types of IFNs, while the revertant VV was strongly resistant to these treatments. Furthermore, we show that the inhibition of VV E3L deletion mutant by IFN occurs at the stage of intermediate gene translation, while the expression of early genes and transcription of intermediate genes are largely unaffected. Using specific siRNAs to suppress the classical IFN-induced antiviral pathways, we found that PKR is the key factor modulated by E3L, while the RNaseL and MxA pathways play limited roles in this Huh7 cell system. Thus, our data demonstrates that VV E3L can mediate strong inhibition activity against all human type I and type II IFNs, mainly through modulation of the PKR pathway in Huh7 cells.


Assuntos
Interferons/antagonistas & inibidores , Proteínas de Ligação a RNA/fisiologia , Proteínas de Ligação a RNA/toxicidade , Vírus Vaccinia/fisiologia , Vírus Vaccinia/patogenicidade , Proteínas Virais/fisiologia , Proteínas Virais/toxicidade , Sequência de Bases , Linhagem Celular , Primers do DNA/genética , DNA Viral/genética , Endorribonucleases/fisiologia , Proteínas de Ligação ao GTP/antagonistas & inibidores , Proteínas de Ligação ao GTP/genética , Proteínas de Ligação ao GTP/fisiologia , Deleção de Genes , Genes Virais , Humanos , Imunidade Inata , Proteínas de Resistência a Myxovirus , Biossíntese de Proteínas , RNA Interferente Pequeno/genética , Proteínas de Ligação a RNA/genética , Proteínas de Ligação a RNA/imunologia , Transdução de Sinais/efeitos dos fármacos , Vírus Vaccinia/genética , Vírus Vaccinia/imunologia , Proteínas Virais/genética , Proteínas Virais/imunologia , Replicação Viral , eIF-2 Quinase/fisiologia
19.
J Gen Virol ; 89(Pt 4): 939-948, 2008 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-18343835

RESUMO

Peptide-conjugated phosphorodiamidate morpholino oligomers (PPMO) are single-stranded nucleic acid-analogue antisense agents that enter cells readily and can reduce gene expression by steric blocking of complementary RNA (cRNA) sequences. Here, we tested a panel of PPMO designed to target conserved sequences in the RNA genome segments encoding polymerase subunits of a highly pathogenic mouse-adapted influenza A virus (SC35M; H7N7). Three PPMO, targeting the translation start site region of PB1 or NP mRNA or the 3'-terminal region of NP viral RNA (vRNA), potently inhibited virus replication in MDCK cells. Primer extension assays showed that treatment with any of the effective PPMO led to markedly reduced levels of mRNA, cRNA and vRNA. Initially, the potential toxicity of a range of intranasally administered PPMO doses was evaluated, by measuring their effect on body weight of uninfected mice. Subsequently, a non-toxic dosing regimen was used to investigate the effect of various PPMO on SC35M infection in a mouse model. Mice administered intranasal treatment of PPMO targeting the PB1-AUG region or NP vRNA, at 3 mug per dose, given once 3 h before and once 2 days after intranasal infection with 10xLD(50) of SC35M, showed a 2 log(10) reduction of viral titre in the lungs and 50 % survival for the 16 day duration of the experiment, whereas the NP-AUG-targeted PPMO treatment resulted in 30 % survival of an otherwise lethal infection. These data suggest that PPMO provide a useful reagent to investigate influenza virus molecular biology and may constitute a therapeutic strategy against highly pathogenic influenza viruses.


Assuntos
Anti-Infecciosos/uso terapêutico , Vírus da Influenza A Subtipo H7N7 , Vírus da Influenza A , Morfolinas/uso terapêutico , Nucleoproteínas/efeitos dos fármacos , Infecções por Orthomyxoviridae/prevenção & controle , Peptídeos/uso terapêutico , Proteínas de Ligação a RNA/efeitos dos fármacos , Proteínas do Core Viral/efeitos dos fármacos , Proteínas Virais/efeitos dos fármacos , Administração Intranasal , Animais , Anti-Infecciosos/administração & dosagem , Anti-Infecciosos/síntese química , Anti-Infecciosos/toxicidade , Linhagem Celular , Cães , Relação Dose-Resposta a Droga , Esquema de Medicação , Avaliação Pré-Clínica de Medicamentos , Marcação de Genes , Genes Virais/genética , Vírus da Influenza A/genética , Camundongos , Camundongos Endogâmicos BALB C , Morfolinas/administração & dosagem , Morfolinas/síntese química , Morfolinas/toxicidade , Morfolinos , Proteínas do Nucleocapsídeo , Nucleoproteínas/genética , Peptídeos/administração & dosagem , Peptídeos/síntese química , Proteínas de Ligação a RNA/genética , Proteínas do Core Viral/genética , Proteínas Virais/genética , Proteínas Virais/toxicidade
20.
Int J Environ Res Public Health ; 4(2): 111-25, 2007 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-17617674

RESUMO

The entomopathogenic Autographa californica (Speyer) nucleopolyhedrovirus (AcMNPV) has been genetically modified to increase its speed of kill. The potential adverse effects of a recombinant AcMNPV (AcAaIT) as well as wild type AcMNPV and wild type Spodoptera littoralis NPV (SlNPV) were studied. Cotton plants were treated with these viruses at concentrations that were adjusted to resemble the recommended field application rate (4 x 10(12) PIBs/feddan, feddan = 4,200 m2) and 3rd instar larvae of S. littoralis were allowed to feed on the contaminated plants. SDS-PAGE, ELISA, and DNA analyses were used to confirm that larvae that fed on these plants were virus-infected. Polyhedra that were purified from the infected larvae were subjected to structural protein analysis. A 32 KDa protein was found in polyhedra that were isolated from all of the viruses. Subtle differences were found in the size and abundance of ODV proteins. Antisera against polyhedral proteins isolated from AcAaIT polyhedra were raised in rabbits. The terminal bleeds from rabbits were screened against four coating antigens (i.e., polyhedral proteins from AcAaIT, AcAaIT from field-infected larvae (AcAaIT-field), AcMNPV, and SlNPV) using a two-dimensional titration method with the coated antigen format. Competitive inhibition experiments were conducted in parallel to optimize antibody and coating antigen concentrations for ELISA. The IC50 values for each combination ranged from 1.42 to 163 microg/ml. AcAaIT-derived polyhedrin gave the lowest IC50 value, followed by those of SlNPV, AcAaIT-field, and AcMNPV. The optimized ELISA system showed low cross reactivity for AcMNPV (0.87%), AcAaIT-field (1.2%), and SlNPV (4.0%). Genomic DNAs isolated from AcAaIT that were passaged in larvae of S. littoralis that were reared in the laboratory or field did not show any detectable differences. Albino rats (male and female) that were treated with AcAaIT, AcMNPV or SlNPV (either orally or by intraperitoneal injection at doses of 1 x 10(8) or 1 x 10(7) PIBs/rat, respectively) appeared to be healthy and showed increased body weight at 21 days posttreatment. The effect of virus administration on hematological, serum biochemical, and histopathological parameters were determined. Slight to moderate differences were observed in most of the hematological parameters. Specifically, serum proteins were decreased markedly in female rats treated orally with SlNPV, and in male rats injected with AcAaIT. SDS-PAGE analysis also showed some changes in serum protein profiles. No marked changes in acetylcholine esterase (AChE) activity were found. Changes in serum glucose, alanine aminotransferase (ALT), aspartate aminotransferase (AST), alkaline phosphatase (ALP), bilirubin, creatinin, and urea were also observed. Immunohistochemical observation of tissues from stomach, intestine, liver, kidney, brain, spleen, and lung also showed slight changes. Fish (Tilapia nilotica) were also exposed to AcAaIT, AcMNPV or SlNPV by incorporating each of the viruses into diet (1 x 10(9) PIBs/group). No mortality was found in treated or untreated fish during the experimental period (28 days). Macrophage phagocytic activity of fish head kidney cells increased with time, reaching maximum values at 180 min for both treated and control fish.


Assuntos
Vírus de Insetos , Nucleopoliedrovírus , Organismos Geneticamente Modificados , Controle Biológico de Vetores , Proteínas Virais/toxicidade , Animais , DNA Viral , Feminino , Genes Virais , Macrófagos , Masculino , Fagocitose , Coelhos , Ratos , Proteínas Recombinantes de Fusão , Proteínas Virais/administração & dosagem , Cultura de Vírus
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